Package jline.api.mapqn

Class MVAVersionParameters

java.lang.Object

jline.api.mapqn.Mapqn_parameters

jline.api.mapqn.MVAVersionParameters

public class MVAVersionParameters
extends Mapqn_parameters

Parameters for MVA version models.

Field Summary

Fields

Modifier and Type	Field	Description
final int	K
final int	M
final double[]	muM
final Matrix	muMAP
final int	N
final Matrix	r
final Matrix	v

Constructor Summary

Constructors

Constructor	Description
MVAVersionParameters(int M, int N, int K, double[] muM, Matrix muMAP, Matrix r, Matrix v)

Method Summary

Modifier and Type	Method	Description
int	getM()
int	getN()
double	q(int i, int j, int k, int h)
void	validate()

Methods inherited from class jline.api.mapqn.Mapqn_parameters

fromNetworkStruct

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

M

public final int M

N

public final int N

K

public final int K

muM

public final double[] muM

muMAP

public final Matrix muMAP

r

public final Matrix r

v

public final Matrix v

Constructor Details

MVAVersionParameters

public MVAVersionParameters(int M,
 int N,
 int K,
 double[] muM,
 Matrix muMAP,
 Matrix r,
 Matrix v)

Method Details

getM

public int getM()

Specified by:

getM in class Mapqn_parameters

getN

public int getN()

Specified by:

getN in class Mapqn_parameters

validate

public void validate()

Overrides:

validate in class Mapqn_parameters

q

public double q(int i,
 int j,
 int k,
 int h)