Constructor Detail

Method Detail

• vAlloc

   final DoubleArray vAlloc(Integer n)

• intVAlloc

   final IntArray intVAlloc(Integer n)

• mAlloc

   final Array<DoubleArray> mAlloc(Integer n, Integer k)

• intMAlloc

   final Array<IntArray> intMAlloc(Integer n, Integer k)

• m3Alloc

   final Array<Array<DoubleArray>> m3Alloc(Integer n, Integer k, Integer v)

• initVector

   final Unit initVector(DoubleArray vector)

• initIntegerVector

   final Unit initIntegerVector(IntArray vector)

• initMatrix

   final Unit initMatrix(Array<DoubleArray> matrix)

• initIntegerMatrix

   final Unit initIntegerMatrix(Array<IntArray> matrix)

• init3DimMatrix

   final Unit init3DimMatrix(Array<Array<DoubleArray>> matrix)

• aRungeKutta

   final Unit aRungeKutta(Integer p, DoubleArray avector, Array<DoubleArray> ka, Double dt, Double h, Array<DoubleArray> T)

• rungeKutta

   final Unit rungeKutta(Integer p, DoubleArray avector, DoubleArray gvector, DoubleArray bvector, Array<DoubleArray> cmatrix, Double dt, Double h, Array<DoubleArray> T, DoubleArray t, Array<DoubleArray> ka, Array<DoubleArray> kg, Array<DoubleArray> kb, Array<Array<DoubleArray>> kc)

• density

   final Double density(Double t, Integer type, DoubleArray par)

• exportToMatlabPhasetype

   final Unit exportToMatlabPhasetype(Integer dim, Double h, Double dt, Double truncpoint, DoubleArray pie, Array<DoubleArray> q, DoubleArray exit)

• exportToEMPHTmainPhasetype

   final Unit exportToEMPHTmainPhasetype(Integer dim, Double h, Double dt, Double truncpoint, DoubleArray pie, Array<DoubleArray> q, DoubleArray exit)

• showPiT

   final Unit showPiT(Integer p, DoubleArray pi, Array<DoubleArray> T, DoubleArray t)

• setStepLength

   final Double setStepLength(Integer p, Array<DoubleArray> T)

• sortObservations

   final Integer sortObservations(Integer size, DoubleArray vec1, DoubleArray vec2)

• sortInterval

   final Integer sortInterval(Integer noOfPairs)

• emStep

   final Unit emStep(Integer p, Double h, DoubleArray pi, Array<DoubleArray> T, DoubleArray t, DoubleArray gvector, DoubleArray avector, DoubleArray bvector, Array<DoubleArray> cmatrix, DoubleArray Bmean, DoubleArray Zmean, Array<DoubleArray> Nmean, Array<DoubleArray> kg, Array<DoubleArray> ka, Array<DoubleArray> kb, Array<Array<DoubleArray>> kc, DoubleArray ett, Array<DoubleArray> gLeft, Array<DoubleArray> aLeft, Array<DoubleArray> bLeft, Array<Array<DoubleArray>> cLeft)

• computeLogLikelihood

   final Double computeLogLikelihood(Double h, Integer p, DoubleArray pi, Array<DoubleArray> T, DoubleArray t, Integer stepIndicator, DoubleArray avector, Array<DoubleArray> ka, Array<DoubleArray> aLeft)

• savePhases

   final Unit savePhases(Integer p, DoubleArray pi, Array<DoubleArray> T)

• emIterate

   final Unit emIterate(Integer noOfEMsteps, Integer p, DoubleArray pi, Array<DoubleArray> T, DoubleArray t, DoubleArray gvector, DoubleArray avector, DoubleArray bvector, Array<DoubleArray> cmatrix, DoubleArray Bmean, DoubleArray Zmean, Array<DoubleArray> Nmean, Array<DoubleArray> kg, Array<DoubleArray> ka, Array<DoubleArray> kb, Array<Array<DoubleArray>> kc, DoubleArray ett, Array<DoubleArray> gLeft, Array<DoubleArray> aLeft, Array<DoubleArray> bLeft, Array<Array<DoubleArray>> cLeft)

• randomPhase

   final Unit randomPhase(Integer p, DoubleArray pi, Array<DoubleArray> T, DoubleArray exitVector, IntArray piLegal, Array<IntArray> TLegal)

• random

   final Double random()

• searchPartner

   final Integer searchPartner()

• setTestData

   final Unit setTestData(DoubleArray obs, DoubleArray weight, DoubleArray censur, DoubleArray cweight, DoubleArray lower, DoubleArray upper, DoubleArray intweight, IntArray partner, Integer noOfObs, Integer noOfCensored, Integer noOfInt)